Clock driven: Encoder

Author: Grasshlw, Yanqi-Chen, fangwei123456

Translator: YeYumin

This tutorial focuses on spikingjelly.clock_driven.encoding and introduces several encoders.

The Base Class of Encoder

All encodes are based on two base encoders:

There are no hidden states in the stateless encoder, and the spikes spike[t] will be encoded from the input data x[t] at time-step t. While the stateful encoder encoder = StatefulEncoder(T) will use encode function to encode the input sequence x containing T time-steps data to spike at the first time of forward, and will output spike[t % T] at thet-th calling forward. The codes of spikingjelly.clock_driven.encoding.StatefulEncoder.forward are:

def forward(self, x: torch.Tensor):
if self.spike is None:
self.encode(x)

t = self.t
self.t += 1
if self.t >= self.T:
self.t = 0
return self.spike[t]


Poisson Encoder

The Poisson encoder spikingjelly.clock_driven.encoding.PoissonEncoder is a stateless encoder. It converts the input data x into a spike with the same shape, which conforms to a Poisson process, i.e., the number of spikes during a certain period follows a Poisson distribution. A Poisson process is also called a Poisson flow. When a spike flow satisfies the requirements of independent increment, incremental stability and commonality, such a spike flow is a Poisson flow. More specifically, in the entire spike stream, the number of spikes appearing in disjoint intervals is independent of each other, and in any interval, the number of spikes is related to the length of the interval while not the starting point of the interval. Therefore, in order to realize Poisson encoding, we set the firing probability of a time step $$p=x$$, where $$x$$ needs to be normalized to [0, 1].

Example: The input image is lena512.bmp , and 20 time steps are simulated to obtain 20 spike matrices.

import torch
import numpy as np
import matplotlib
import matplotlib.pyplot as plt
from PIL import Image
from spikingjelly.clock_driven import encoding
from spikingjelly import visualizing

# 读入lena图像
lena_img = np.array(Image.open('lena512.bmp')) / 255
x = torch.from_numpy(lena_img)

pe = encoding.PoissonEncoder()

# 仿真20个时间步长，将图像编码为脉冲矩阵并输出
w, h = x.shape
out_spike = torch.full((20, w, h), 0, dtype=torch.bool)
T = 20
for t in range(T):
out_spike[t] = pe(x)

plt.figure()
plt.imshow(x, cmap='gray')
plt.axis('off')

visualizing.plot_2d_spiking_feature_map(out_spike.float().numpy(), 4, 5, 30, 'PoissonEncoder')
plt.axis('off')
plt.show()


The original grayscale image of Lena and 20 resulted spike matrices are as follows:

Comparing the original grayscale image to the spike matrix, it can be found that the spike matrix is very close to the contour of the original grayscale image, which shows the superiority of the Poisson encoder.

After simulating the Poisson encoder with the Lena grayscale image for 512 time steps, we superimpose the spike matrix obtained in each step, and obtain the result of the superposition of steps 1, 128, 256, 384, and 512, and draw the picture:

# 仿真512个时间不长，将编码的脉冲矩阵逐次叠加，得到第1、128、256、384、512次叠加的结果并输出
superposition = torch.full((w, h), 0, dtype=torch.float)
superposition_ = torch.full((5, w, h), 0, dtype=torch.float)
T = 512
for t in range(T):
superposition += pe(x).float()
if t == 0 or t == 127 or t == 255 or t == 387 or t == 511:
superposition_[int((t + 1) / 128)] = superposition

# 归一化
for i in range(5):
min_ = superposition_[i].min()
max_ = superposition_[i].max()
superposition_[i] = (superposition_[i] - min_) / (max_ - min_)

# 画图
visualizing.plot_2d_spiking_feature_map(superposition_.numpy(), 1, 5, 30, 'PoissonEncoder')
plt.axis('off')

plt.show()


The superimposed images are as follows:

It can be seen that when the simulation is sufficiently long, the original image can almost be reconstructed with the superimposed images composed of spikes obtained by the Poisson encoder.

Periodic Encoder

Periodic encoder spikingjelly.clock_driven.encoding.PoissonEncoder is an encoder that periodically outputs spikes from a given spike sequence. spike is set at the initialization of PeriodicEncoder, and we can also use spikingjelly.clock_driven.encoding.PoissonEncoder.encode to set a new spike.

class PeriodicEncoder(BaseEncoder):
def __init__(self, spike: torch.Tensor):
super().__init__(spike.shape[0])
self.encode(spike)
def encode(self, spike: torch.Tensor):
self.spike = spike
self.T = spike.shape[0]


Example: Considering three neurons and spike sequences with 5 time steps, which are 01000, 10000, and 00001 respectively, we initialize a periodic encoder and output simulated spike data with 20 time steps.

spike = torch.full((5, 3), 0)
spike[1, 0] = 1
spike[0, 1] = 1
spike[4, 2] = 1

pe = encoding.PeriodicEncoder(spike)

# 输出周期性编码器的编码结果
out_spike = torch.full((20, 3), 0)
for t in range(out_spike.shape[0]):
out_spike[t] = pe(spike)

visualizing.plot_1d_spikes(out_spike.float().numpy(), 'PeriodicEncoder', 'Simulating Step', 'Neuron Index',
plot_firing_rate=False)
plt.show()


Latency encoder

The latency encoder spikingjelly.clock_driven.encoding.LatencyEncoder is an encoder that delays the delivery of spikes based on the input data x. When the stimulus intensity is greater, the firing time is earlier, and there is a maximum spike latency. Therefore, for each input data x, a spike sequence with a period of the maximum spike latency can be obtained.

The spike firing time $$t_f$$ and the stimulus intensity $$x \in [0, 1]$$ satisfy the following formulas. When the encoding type is linear (function_type='linear')

$t_f(x) = (T - 1)(1 - x)$

When the encoding type is logarithmic (function_type='log' )

$t_i = (t_{max} - 1) - ln(\alpha * x_i + 1)$

In the formulas, $$t_{max}$$ is the maximum spike latency, and $$x_i$$ needs to be normalized to $$[0, 1]$$.

Consider the second formula, $$\alpha$$ needs to satisfy:

$(T - 1) - ln(\alpha * 1 + 1) = 0$

This may cause the encoder to overflow:

$\alpha = e^{T - 1} - 1$

because $$\alpha$$ will increase exponentially as $$T$$ increases.

Example: Randomly generate six x, each of which is the stimulation intensity of 6 neurons, and set the maximum spike latency to 20, then use LatencyEncoder to encode the above input data.

import torch
import matplotlib.pyplot as plt
from spikingjelly.clock_driven import encoding
from spikingjelly import visualizing

# 随机生成6个神经元的刺激强度，设定最大脉冲时间为20
N = 6
x = torch.rand([N])
T = 20

# 将输入数据编码为脉冲序列
le = encoding.LatencyEncoder(T)

# 输出延迟编码器的编码结果
out_spike = torch.zeros([T, N])
for t in range(T):
out_spike[t] = le(x)

print(x)
visualizing.plot_1d_spikes(out_spike.numpy(), 'LatencyEncoder', 'Simulating Step', 'Neuron Index',
plot_firing_rate=False)
plt.show()


When the randomly generated stimulus intensities are 0.6650, 0.3704, 0.8485, 0.0247, 0.5589, and 0.1030, the spike sequence obtained is as follows:

Weighted phase encoder

Weighted phase encoder is based on binary representations of floats.

Inputs are decomposed to fractional bits and the spikes correspond to the binary value from the leftmost bit to the rightmost bit. Compared to rate coding, each spike in phase coding carries more information. When phase is $$K$$, number lies in the interval $$[0, 1-2^{-K}]$$ can be encoded. Example when $$K=8$$ in original paper 1 is illustrated here:

Phase (K=8)

1

2

3

4

5

6

7

8

Spike weight $$\omega(t)$$

2-1

2-2

2-3

2-4

2-5

2-6

2-7

2-8

192/256

1

1

0

0

0

0

0

0

1/256

0

0

0

0

0

0

0

1

128/256

1

0

0

0

0

0

0

0

255/256

1

1

1

1

1

1

1

1

1

Kim J, Kim H, Huh S, et al. Deep neural networks with weighted spikes[J]. Neurocomputing, 2018, 311: 373-386.